Protein Interaction Workflow

PPI Copilot v0.1

Browser-based MVP for FASTA cleanup, uploaded PDB review, HADDOCK-style score ranking, ChimeraX script generation, and research report export.

InputFASTA/PDB

ScoringDCI

ExportZIP

Sequence Copilot

Upload .fasta, .fa, .fna, .faa, or paste DNA/protein sequence text.

Protein A FASTA or sequence

Protein B FASTA or sequence

Structure Copilot

Upload .pdb or .ent files for pLDDT/B-factor and chain summaries.

PDB upload is optional for v0.1.

Scoring Copilot

Upload HADDOCK/ClusPro-style .csv, .tsv, or .txt score tables.

Run v0.1 workflow

Generates ranked models, report files, FASTA output, optional PDB quality summaries, and a ZIP package.